STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM27894.1Predicted transcriptional regulator. (122 aa)    
Predicted Functional Partners:
SEL40203.1
Peptidase family M48.
 
 
  0.894
SEM27404.1
Peptidase family M48.
 
 
  0.812
SEL65150.1
Copper chaperone CopZ.
  
  
 0.780
SEL41611.1
Penicillinase repressor.
  
     0.764
SEM27879.1
Secondary thiamine-phosphate synthase enzyme.
       0.661
SEM27915.1
Membrane-associated protein.
       0.605
SEM27927.1
Undecaprenyl-diphosphatase.
       0.550
SEL88825.1
Two-component system, OmpR family, response regulator MprA.
       0.501
SEL88208.1
Hypothetical protein.
    
  0.435
SEM19167.1
WD domain-containing protein, G-beta repeat-containing protein.
    
  0.414
Your Current Organism:
Streptacidiphilus jiangxiensis
NCBI taxonomy Id: 235985
Other names: JCM 12277, NBRC 100920, S. jiangxiensis, Streptacidiphilus jiangxiensis Huang et al. 2005, strain 33214
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.