STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM53826.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (221 aa)    
Predicted Functional Partners:
SEM53798.1
Signal transduction histidine kinase.
 
   0.952
SEK85255.1
Signal transduction histidine kinase.
   
 0.911
SEL67310.1
Signal transduction histidine kinase.
 
   0.792
SEM05006.1
Signal transduction histidine kinase.
 
   0.781
SEM23765.1
Signal transduction histidine kinase.
  
   0.780
SEL19996.1
Signal transduction histidine kinase.
  
   0.779
SEM62026.1
Signal transduction histidine kinase.
  
   0.769
SEM14422.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
   0.761
SEK23313.1
Signal transduction histidine kinase.
  
   0.756
SEM73298.1
Histidine kinase.
 
   0.754
Your Current Organism:
Streptacidiphilus jiangxiensis
NCBI taxonomy Id: 235985
Other names: JCM 12277, NBRC 100920, S. jiangxiensis, Streptacidiphilus jiangxiensis Huang et al. 2005, strain 33214
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