STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM61399.1Hypothetical protein. (621 aa)    
Predicted Functional Partners:
SEM00712.1
PQQ-like domain-containing protein.
 
     0.780
SEL59430.1
Chitinase.
  
     0.656
SEL98209.1
Carbohydrate binding domain-containing protein.
  
     0.635
SEL72915.1
Glycosyl hydrolases family 18.
  
     0.614
SEM87453.1
Chitinase.
  
     0.587
SEL38798.1
Hypothetical protein.
  
     0.573
SEK59908.1
Putative Ig domain-containing protein.
  
     0.567
SEM48687.1
Zinc transporter, ZIP family.
  
     0.562
SEM44962.1
Serine protease.
  
     0.541
SEM61380.1
Acetyltransferase (GNAT) family protein.
       0.541
Your Current Organism:
Streptacidiphilus jiangxiensis
NCBI taxonomy Id: 235985
Other names: JCM 12277, NBRC 100920, S. jiangxiensis, Streptacidiphilus jiangxiensis Huang et al. 2005, strain 33214
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.