STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX88900.1Hypothetical protein; [C] COG2863 Cytochrome c553. (146 aa)    
Predicted Functional Partners:
ADG881_159
[C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
  
 0.888
EDX89384.1
[O] COG3278 Cbb3-type cytochrome oxidase, subunit 1; Belongs to the heme-copper respiratory oxidase family.
  
 0.878
EDX90878.1
Cytochrome c oxidase, subunit II, putative; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.812
EDX89487.1
[C] COG2857 Cytochrome c1.
 
 
 0.623
EDX90992.1
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.573
EDX89593.1
Cytochrome b(N-terminal domain)/b6/petB subfamily, putative; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.557
EDX89443.1
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 0.518
ADG881_990
[MU] COG1538 Outer membrane protein.
  
    0.488
ADG881_774
PKD domain protein; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
  
  
  0.468
Your Current Organism:
Alcanivorax sp. DG881
NCBI taxonomy Id: 236097
Other names: A. sp. DG881
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