STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX90895.1General secretion pathway protein D; [NU] COG1450 Type II secretory pathway, component PulD. (694 aa)    
Predicted Functional Partners:
EDX89609.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
 0.997
EDX89248.1
General secretion pathway protein G; [NU] COG2165 Type II secretory pathway, pseudopilin PulG.
  
 0.903
ADG881_218
General secretion pathway protein J; [U] COG4795 Type II secretory pathway, component PulJ.
 
  
 0.870
EDX89720.1
General secretion pathway protein K; [U] COG3156 Type II secretory pathway, component PulK.
 
   
 0.840
ADG881_19
General secretion pathway protein F; [NU] COG1459 Type II secretory pathway, component PulF.
 
  
 0.793
EDX89840.1
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.755
ADG881_626
General secretion pathway protein I; [NU] COG2165 Type II secretory pathway, pseudopilin PulG.
 
  
 0.744
EDX89464.1
Type IV pilus secretin PilQ subfamily, putative; [U] COG4796 Type II secretory pathway, component HofQ.
 
  
0.546
EDX91060.1
Bacterial Peptidase A24 N-terminal domain family; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.534
EDX89065.1
GSPII_E N-terminal domain family; [NU] COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
  
 0.512
Your Current Organism:
Alcanivorax sp. DG881
NCBI taxonomy Id: 236097
Other names: A. sp. DG881
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.