STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_970004Lactam utilization protein lamb. (256 aa)    
Predicted Functional Partners:
BKCO1_1500013
Proteophosphoglycan 5.
   
 0.996
BKCO1_2500094
Cell wall protein awa1-like.
   
 0.987
BKCO1_1200027
Adp atp carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 0.905
BKCO1_1700077
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 0.884
BKCO1_7700018
Non-repetitive nucleoporin.
   
 0.849
BKCO1_20000116
Peptidyl-prolyl cis-trans isomerase.
    
 0.844
BKCO1_21000152
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.838
BKCO1_1110005
Outer mitochondrial membrane protein porin.
   
 0.832
BKCO1_900088
Mrna splicing factor.
    
 0.830
BKCO1_14000173
Cell cycle control protein.
    
 0.829
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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