STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_5800056Cell division control protein 48; Belongs to the AAA ATPase family. (822 aa)    
Predicted Functional Partners:
BKCO1_3400019
Cdc48-dependent protein degradation adaptor protein.
   
 0.992
BKCO1_1900014
MPN domain-containing protein.
   
 0.992
BKCO1_5300084
Ubx domain protein.
    
 0.976
BKCO1_6700058
Ubiquitin fusion degradation protein ufd1.
    
 0.974
BKCO1_1700075
Ubiquitin-protein ligase sel1 ubx2.
   
 0.972
BKCO1_4600048
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.972
BKCO1_2100041
Ring finger protein.
    
 0.972
BKCO1_6700023
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.968
BKCO1_14000146
Otu-like cysteine protease.
   
 0.968
BKCO1_520001
Ubx domain protein.
    
 0.965
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.