STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_3100016Ring finger domain protein. (347 aa)    
Predicted Functional Partners:
BKCO1_5500020
Ubx domain protein.
    
 
 0.829
BKCO1_8000142
FK506-binding protein.
    
 
 0.812
BKCO1_4500093
Amfr protein.
    
 
 0.702
BKCO1_7000188
Not2 family protein.
    
 
 0.702
BKCO1_2000189
Ubiquitin-conjugating enzyme.
    
 
 0.697
BKCO1_3100095
Ubiquitin-conjugating enzyme e2-18 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.679
BKCO1_8000160
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
    
 
 0.619
BKCO1_2200031
Protein scaf8-like isoform x1.
    
 
 0.541
BKCO1_2100041
Ring finger protein.
    
 
 0.541
BKCO1_13000153
Ring finger domain protein.
    
 
 0.541
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.