STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_2000086Kinase-like protein. (604 aa)    
Predicted Functional Partners:
BKCO1_3000179
Low temperature viability protein.
    
 0.972
BKCO1_3200088
Rrna processing protein.
    
 0.908
BKCO1_1000399
Serine threonine-protein kinase rio2.
    
 0.894
BKCO1_1400047
Tsr1 ribosome biogenesis.
    
 0.862
BKCO1_300016
Glycogen synthase kinase; Belongs to the protein kinase superfamily.
    
 0.842
BKCO1_3400067
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
    
 0.835
BKCO1_1200051
40s ribosomal protein s3; Belongs to the universal ribosomal protein uS3 family.
    
 0.819
BKCO1_200011
Topoisomerase 1-associated factor 1.
    
 0.819
BKCO1_8000030
Serine/threonine-protein kinase.
   
 0.791
BKCO1_2100028
40s ribosomal protein s20.
    
 0.767
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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