STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_11000117Dicer-like protein 1; Belongs to the helicase family. Dicer subfamily. (1554 aa)    
Predicted Functional Partners:
BKCO1_21000109
Piwi domain-containing protein.
   
 0.884
BKCO1_18000151
Rna interference and silencing protein.
   
 0.855
BKCO1_7000110
Rna interference and silencing protein.
   
 0.855
BKCO1_1000249
Argonaute-like protein.
   
 0.855
BKCO1_2400090
Protein argonaute 1-like.
   
 0.855
BKCO1_560008
Mitochondrial 37s ribosomal protein mrps9.
   
 
 0.848
BKCO1_3000089
Mitochondrial ribosomal protein.
  
 
 0.834
BKCO1_1140003
Mitochondrial 54s ribosomal protein 8; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.832
BKCO1_1300089
Mitochondrial 54s ribosomal protein 17 30.
   
 
 0.829
BKCO1_5100030
Mitochondrial 37s ribosomal protein 16.
   
 
 0.827
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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