STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_17000142Atp-dependent rna helicase rok1. (766 aa)    
Predicted Functional Partners:
BKCO1_4000212
Sas10 utp3 family protein.
   
 0.996
BKCO1_1240002
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.990
BKCO1_2100036
U3 small nucleolar RNA-associated protein 22.
   
 0.987
BKCO1_5700050
Rrna biogenesis protein rrp5.
   
 0.986
BKCO1_3500083
Uncharacterized protein.
   
 
 0.978
BKCO1_1000251
Small nucleolar ribonucleoprotein complex subunit utp14.
   
 0.976
BKCO1_1100047
Deah-box rna helicase.
   
 0.969
BKCO1_5900027
U3 small nucleolar rna associated protein.
   
 0.968
BKCO1_200045
Atp-dependent rrna helicase rrp3; Belongs to the DEAD box helicase family.
  
0.968
BKCO1_4400052
Small nucleolar ribonucleoprotein complex subunit.
   
 
 0.966
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.