STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_1500059Protein phosphatase 4 core regulatory subunit r2 protein. (554 aa)    
Predicted Functional Partners:
BKCO1_38000113
Dna polymerase delta subunit 2.
    
 0.625
BKCO1_5300086
Survival motor neuron.
    
 0.606
BKCO1_6000034
DNA polymerase.
   
 0.595
BKCO1_1800060
Dna excision repair protein ercc-4.
    
 0.580
BKCO1_5000234
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.572
BKCO1_820001
Ankyrin repeat and protein kinase domain-containing protein 1.
    
  0.569
BKCO1_12000115
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.561
BKCO1_2400078
Small nuclear ribonucleoprotein Sm D2.
    
  0.550
BKCO1_34000115
Histone acetyltransferase type b subunit 2.
    
  0.541
BKCO1_35000113
Small nuclear ribonucleoprotein G.
    
  0.540
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.