STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_1300038Hrq family protein. (491 aa)    
Predicted Functional Partners:
BKCO1_4000140
50s ribosomal protein l2.
   
   0.761
BKCO1_2000286
Ring finger domain protein.
   
 
 0.743
BKCO1_5000163
Mitochondrial 37s ribosomal protein mrp4.
   
 
 0.737
BKCO1_3800028
Mitochondrial ribosomal protein.
   
 
 0.729
BKCO1_6000041
Mitochondrial 54s ribosomal protein 6.
   
 
 0.713
BKCO1_3000089
Mitochondrial ribosomal protein.
   
 
 0.710
BKCO1_6000232
Mitochondrial 37s ribosomal protein mrps5; Belongs to the universal ribosomal protein uS5 family.
   
   0.706
BKCO1_4200027
Mitochondrial 54s ribosomal protein 3.
   
 
 0.704
BKCO1_20000140
Ribosomal protein s15.
   
   0.703
BKCO1_3300067
Mitochondrial 54s ribosomal protein 23; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.700
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.