STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_11000131Aspartyl protease; Belongs to the peptidase A1 family. (415 aa)    
Predicted Functional Partners:
BKCO1_12000185
Reticulon-like protein.
    
  0.563
BKCO1_3400084
A-pheromone processing metallopeptidase ste23.
     
 0.490
BKCO1_3500095
Pheromone processing endoprotease kex2; Belongs to the peptidase S8 family.
    
 0.458
BKCO1_3800062
Ph response protein.
    
 
 0.450
BKCO1_2600060
Ph-response regulator protein pali rim9.
    
 
 0.449
BKCO1_7200032
Chromosome segregation protein.
    
  0.412
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.