STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_1100011Formylmethionine deformylase-like protein. (1044 aa)    
Predicted Functional Partners:
BKCO1_11000135
Uncharacterized protein.
     
 0.671
BKCO1_5300042
Carbohydrate-binding module family 18 protein.
    
  0.670
BKCO1_4000025
Extracellular serine-threonine rich protein.
    
  0.670
BKCO1_14000166
Integral membrane protein.
    
  0.670
BKCO1_2000042
Sec1 family superfamily; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.605
BKCO1_8900026
Calponin domain-containing protein.
   
 
 0.527
BKCO1_13000121
Dna-directed rna polymerase ii subunit rpb9.
    
 0.515
BKCO1_1000199
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 
  0.490
BKCO1_5100091
Ph domain-containing protein.
    
 0.487
BKCO1_19000159
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
    
 0.483
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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