STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_1090003Zinc knuckle domain containing protein. (243 aa)    
Predicted Functional Partners:
BKCO1_2900027
Atp-dependent rna helicase dob1.
   
 
 0.708
BKCO1_4100044
Rrna-processing protein efg1.
   
   0.627
BKCO1_8000168
Pap 25a-associated.
   
 
 0.611
BKCO1_2000140
Dna polymerase sigma subunit.
   
 
 0.611
BKCO1_1240002
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
   0.576
BKCO1_1900035
60s acidic ribosomal protein p1; Belongs to the eukaryotic ribosomal protein P1/P2 family.
   
   0.546
BKCO1_3700062
60s ribosomal protein l10.
   
  0.539
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
   
   0.535
BKCO1_2000246
Dead deah box rna helicase.
   
 
 0.527
BKCO1_4300036
Protein MAK16; Belongs to the MAK16 family.
   
   0.523
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.