STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_8000246Ubiquitin-like protein 1. (78 aa)    
Predicted Functional Partners:
BKCO1_5200045
Ulp1 protease family protein.
    
 0.992
BKCO1_10400019
Ring-box protein 1.
   
 0.992
BKCO1_8000045
Nedd8 activating enzyme.
    
 0.991
BKCO1_5900020
Phd finger and domain.
    
 0.990
BKCO1_4500084
Nedd8-conjugating enzyme ubc12; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.990
BKCO1_1800039
Elongation factor 3.
    
   0.989
BKCO1_6000035
Cop9 signalosome complex subunit 5.
   
 0.987
BKCO1_1300042
Cop9 signalosome subunit 6.
   
 0.986
BKCO1_15000169
Cop9 signalosome subunit 1.
    
 0.983
BKCO1_11000126
NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme.
    
 0.982
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.