STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_8000018U5 small nuclear ribonucleoprotein component. (985 aa)    
Predicted Functional Partners:
BKCO1_8500031
Pre-mrna splicing helicase.
   
 0.998
BKCO1_800031
Prp1 splicing factor.
   
 0.998
BKCO1_100042
Pre-mrna-processing-splicing factor 8.
   
 0.998
BKCO1_12000115
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.997
BKCO1_1500056
U5 snrnp complex.
   
 0.997
BKCO1_6000218
Small nuclear ribonucleoprotein f.
   
 0.996
BKCO1_5000234
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.996
BKCO1_2400078
Small nuclear ribonucleoprotein Sm D2.
   
 0.996
BKCO1_35000113
Small nuclear ribonucleoprotein G.
   
 0.995
BKCO1_4400043
Dna binding protein sart.
    
 0.993
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.