STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_6000220Nucleoporin nup120 160. (1222 aa)    
Predicted Functional Partners:
BKCO1_1000359
Nucleoporin sonb.
    
 0.991
BKCO1_2900042
Nuclear pore complex subunit nup133.
  
 0.989
BKCO1_21000152
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
  
 0.987
BKCO1_60003
Wd40 repeat-like protein; Belongs to the WD repeat SEC13 family.
    
 0.985
BKCO1_240003
Nucleoporin.
   
 0.947
BKCO1_9700018
Nucleoporin nup44.
    
 0.930
BKCO1_2300018
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
  
 
   0.925
BKCO1_2100039
Nuclear pore complex subunit nup159.
    
 
 0.898
BKCO1_2000147
Nuclear pore protein.
    
 0.873
BKCO1_5100019
Nuclear pore complex subunit nup192.
   
 0.867
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.