STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_4000163Cell cycle control protein. (721 aa)    
Predicted Functional Partners:
BKCO1_900088
Mrna splicing factor.
   
 0.994
BKCO1_14000173
Cell cycle control protein.
    
   0.978
BKCO1_8000018
U5 small nuclear ribonucleoprotein component.
    
 
 0.978
BKCO1_400013
Pre-mrna-splicing factor cef1.
    
   0.978
BKCO1_4600030
Cell cycle control protein.
    
 0.965
BKCO1_180007
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.964
BKCO1_15000168
Pre-mrna-splicing factor syf2.
    
 0.962
BKCO1_100042
Pre-mrna-processing-splicing factor 8.
    
 
 0.942
BKCO1_4300052
Peptidyl prolyl cis-trans isomerase cyclophilin.
    
  0.935
BKCO1_16000158
Pre-mrna-splicing factor syf1.
    
 
 0.925
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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