STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_6100015L-xylulose reductase. (276 aa)    
Predicted Functional Partners:
BKCO1_1600046
Sorbitol dehydrogenase.
   
 
  0.810
BKCO1_1300043
Sorbitol dehydrogenase.
   
 
  0.810
BKCO1_5000027
Sorbitol utilization protein sou2.
  
  
 
0.810
BKCO1_1400074
Alcohol dehydrogenase.
   
 
  0.810
BKCO1_15000101
L-arabinitol 4-dehydrogenase.
   
 
  0.741
BKCO1_2000066
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.587
BKCO1_1900029
Malonyl-acyl carrier protein transacylase.
  
 0.543
BKCO1_3500015
Metallo-beta-lactamase family protein.
   
  0.538
BKCO1_3100082
2fe-2s iron-sulfur cluster binding domain-containing protein.
   
  0.538
BKCO1_4500014
Peroxisomal hydratase-dehydrogenase-epimerase.
   
 
0.503
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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