STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_1040002Abc transporter atp-binding protein arb1. (618 aa)    
Predicted Functional Partners:
BKCO1_600021
Translation initiation factor rli1.
   
 
 0.936
BKCO1_4200026
Eukaryotic translation initiation factor 5b.
   
 
 0.865
BKCO1_1800039
Elongation factor 3.
   
 
0.844
BKCO1_800092
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.808
BKCO1_4000018
Elongation factor 3.
   
 
0.795
BKCO1_6700048
60s ribosomal protein l25.
   
 
 0.792
BKCO1_19000229
Eukaryotic translation initiation factor 2 subunit gamma.
   
 0.791
TIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.
   
 
 0.791
BKCO1_16000151
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
    
 
 0.790
BKCO1_1700052
Eukaryotic translation initiation factor 2 subunit alpha.
   
 0.786
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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