STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_11100011G-patch dna repair protein. (520 aa)    
Predicted Functional Partners:
BKCO1_200053
Coatamer subunit protein.
  
 0.991
BKCO1_500023
Pre-mrna-splicing factor atp-dependent rna helicase prp43.
   
 0.991
BKCO1_30000122
Calcium homeostasis endoplasmic reticulum protein.
   
 0.957
BKCO1_8000047
U2 snrnp component prp10.
   
 0.957
BKCO1_11000120
L domain-like protein.
   
 0.949
BKCO1_400079
Splicing factor 3a subunit 2.
    
 0.937
BKCO1_3000066
Splicing factor 3a subunit 3.
   
 0.914
BKCO1_26000143
Pre-mrna splicing factor.
   
 0.903
BKCO1_2600087
Tudor pwwp mbt.
  
 
  0.887
BKCO1_6700030
Ureidoglycolate lyase.
    
 0.875
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.