STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_6600050Transcription initiation factor tfiid component taf4 protein. (614 aa)    
Predicted Functional Partners:
BKCO1_970003
Urea carboxylase.
  
 0.813
BKCO1_1000646
Allophanate hydrolase.
  
 0.813
BKCO1_24000113
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
 
 0.664
BKCO1_1000098
Nicotinamide-nucleotide adenylyltransferase; Belongs to the eukaryotic NMN adenylyltransferase family.
  
 
 0.649
BKCO1_4500094
Nudix hydrolase 1; Belongs to the Nudix hydrolase family.
    
  0.587
BKCO1_1400098
Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Involved in the catabolism of quinolinic acid (QA). Belongs to the NadC/ModD family.
  
 
 0.574
BKCO1_4700074
4-hydroxyphenylpyruvate dioxygenase.
   
 0.548
BKCO1_9000181
Branched-chain amino acid aminotransferase.
  
  0.540
BKCO1_6000191
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
  0.540
BKCO1_5200085
Branched-chain amino acid aminotransferase.
  
  0.540
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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