STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_2300089Ph domain protein. (1025 aa)    
Predicted Functional Partners:
BKCO1_35000113
Small nuclear ribonucleoprotein G.
    
  0.746
BKCO1_19000136
Nuclear cap-binding protein subunit 2.
   
  0.740
BKCO1_100071
Vacuolar protein sorting-associated protein; May be involved in recycling of membrane proteins between an endocytic compartment and the TGN; Belongs to the VPS13 family.
    
 
 0.734
BKCO1_19000223
Uncharacterized protein.
    
 0.731
BKCO1_8100015
U1 small nuclear ribonucleoprotein.
  
 0.722
BKCO1_2400078
Small nuclear ribonucleoprotein Sm D2.
    
  0.721
BKCO1_300017
Cap binding protein.
    
  0.719
BKCO1_5100040
Small nuclear ribonucleoprotein Sm D3.
   
 0.715
BKCO1_5100039
Alpha and gamma adaptin binding protein p34 protein.
   
 0.715
BKCO1_5000234
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
  0.714
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
Server load: low (26%) [HD]