STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_4800049Glycoside hydrolase family 71 protein. (452 aa)    
Predicted Functional Partners:
BKCO1_800049
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
  0.589
BKCO1_10700011
Fanconi anemia group m protein.
    
 0.576
BKCO1_1800060
Dna excision repair protein ercc-4.
    
 0.560
BKCO1_940006
Uncharacterized protein.
   
 0.559
BKCO1_7100043
Uncharacterized protein.
   
 0.559
BKCO1_270004
Deoxyuridine 5-triphosphate nucleotidohydrolase.
   
 0.559
BKCO1_2000203
Nuclear transport factor 2.
    
 0.559
BKCO1_1900014
MPN domain-containing protein.
    
 0.540
BKCO1_3900066
Rho guanyl nucleotide exchange factor.
    
 0.534
BKCO1_400050
Replication factor a2.
    
  0.520
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.