STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_35000110Rna-3-phosphate cyclase family protein. (404 aa)    
Predicted Functional Partners:
BKCO1_4000016
Ribosome biogenesis protein.
   
 0.999
BKCO1_790007
Small nucleolar ribonucleoprotein complex.
   
 0.997
BKCO1_560004
U3 small nucleolar rna-associated protein.
   
 0.997
BKCO1_3200088
Rrna processing protein.
   
 
 0.997
BKCO1_4400028
Small nucleolar ribonucleoprotein complex component.
   
 0.997
BKCO1_8000166
Wd40 repeat-like protein.
   
 0.996
BKCO1_3800087
Wd g-beta repeat containing protein.
   
 
 0.995
BKCO1_3000054
Periodic tryptophan protein 2.
   
 
 0.995
BKCO1_540003
Ribosome biogenesis protein.
   
 
 0.993
BKCO1_1090005
Meiotic recombination protein dmc1.
   
 0.993
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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