STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_3100074Alpha-methylacyl-racemase. (475 aa)    
Predicted Functional Partners:
BKCO1_2900075
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
  
 
 0.779
BKCO1_15000153
Short chain dehydrogenase.
   
 0.704
BKCO1_2900030
Sterol carrier protein 2; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.699
BKCO1_5400038
Peroxisomal targeting signal receptor.
     
 0.683
BKCO1_21000138
Peroxisome biosynthesis protein (Pas10 peroxin-12).
    
 0.667
BKCO1_19000247
Peroxisome biosynthesis protein (Peroxin-10).
     
 0.666
BKCO1_7100032
Peroxisomal membrane protein.
    
 0.665
BKCO1_2000170
Peroxisomal membrane anchor protein.
     
 0.646
BKCO1_6100028
Benzaldehyde lyase; Belongs to the TPP enzyme family.
  
 
 0.563
BKCO1_5900046
Ubiquitin-conjugating enzyme e2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.561
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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