STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_3000084P-loop containing nucleoside triphosphate hydrolase protein. (622 aa)    
Predicted Functional Partners:
BKCO1_5800038
Low-density lipoprotein receptor ywtd.
    
  0.651
BKCO1_1600018
Vesicle-associated membrane protein 4.
     
 0.647
BKCO1_200007
Integral membrane protein.
    
 0.550
BKCO1_100070
Ubiquitin.
    
 0.550
BKCO1_600098
Basic-leucine zipper transcription factor.
    
 0.529
BKCO1_8000113
Ubiquitin-40s ribosomal protein s31 fusion protein.
    
 0.529
BKCO1_400052
Cia30 family protein.
    
 0.529
BKCO1_17000103
Mfs general substrate transporter.
     
 0.474
BKCO1_11000129
Mfs general substrate transporter.
     
 0.474
BKCO1_3000181
Membrane transporter protein.
     
 0.474
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.