STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_1000292MJ1316 domain-containing protein. (321 aa)    
Predicted Functional Partners:
BKCO1_3800060
Yt521-b-like splicing.
    
 0.997
BKCO1_6800045
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.961
BKCO1_8000015
Cleavage and polyadenylation specificity factor subunit.
    
 0.960
BKCO1_6600051
Metallo-beta-lactamase superfamily protein.
   
 0.960
BKCO1_7100011
Mrna cleavage and polyadenylation specificity factor complex subunit.
    
 0.960
BKCO1_3500071
Zinc finger ccch type domain containing protein.
    
 0.960
BKCO1_1000421
Pre-mrna polyadenylation factor fip1.
   
 0.960
BKCO1_20000154
Polyadenylation factor subunit 2.
   
 0.957
BKCO1_21000110
Mrna 3-end-processing protein rna14.
    
 0.940
BKCO1_6800040
Rna recognition motif containing protein.
    
 0.936
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.