STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_1000395Proteasome activator subunit 4. (1979 aa)    
Predicted Functional Partners:
BKCO1_3100017
Proteasome subunit alpha type.
    
 0.993
BKCO1_4300089
Proteasome subunit alpha type.
    
 0.992
BKCO1_3600041
Uridylate kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and dUMP as phosphate acceptors, but can also use CMP, dCMP and AMP. Belongs to the peptidase T1A family.
    
 0.988
BKCO1_7100046
26s proteasome regulatory subunit s5a.
    
 0.985
BKCO1_3800086
Proteasome subunit beta.
    
 0.981
BKCO1_2200067
Proteasome subunit alpha type.
    
 0.981
BKCO1_3800056
Proteasome subunit beta.
    
 0.979
BKCO1_7800018
Proteasome subunit alpha type.
    
 0.977
BKCO1_19000236
Proteasome component pre4.
    
 0.976
BKCO1_8000215
Proteasome subunit beta.
    
 0.975
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.