STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_1200021Vacuolar import degradation protein vid24. (696 aa)    
Predicted Functional Partners:
BKCO1_4600015
Purine nucleoside phosphorylase.
  
 0.838
BKCO1_1600081
Nicotinamide riboside kinase 1.
    
 0.838
BKCO1_2700025
Cytidine deaminase.
   
 0.830
BKCO1_2000199
IMP-specific 5'-nucleotidase 1; IMP-specific 5'-nucleotidase involved in IMP (inositol monophosphate) degradation.
     
 0.804
BKCO1_5100059
Uracil phosphoribosyltransferase.
   
 0.789
BKCO1_900006
Pyrimidine 5-nucleotidase.
   
 
 0.773
BKCO1_5500011
Adenosine kinase.
  
 
 0.770
BKCO1_10000125
Adenine phosphoribosyltransferase.
    
 0.768
BKCO1_1000328
Pyrazinamidase nicotinamidase.
     
 0.766
BKCO1_6000137
Nad-dependent histone deacetylase sir2.
   
 
 0.758
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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