STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_1600053Ser arg-related nuclear matrix protein. (1083 aa)    
Predicted Functional Partners:
BKCO1_3200019
60s ribosomal protein l5.
  
 0.996
BKCO1_2100028
40s ribosomal protein s20.
  
 0.996
BKCO1_1200051
40s ribosomal protein s3; Belongs to the universal ribosomal protein uS3 family.
  
 0.996
BKCO1_5400028
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
  
 0.996
BKCO1_6700048
60s ribosomal protein l25.
  
 0.996
BKCO1_5300093
40s ribosomal protein s23; Belongs to the universal ribosomal protein uS12 family.
  
 0.996
BKCO1_28000114
40s ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.
  
 0.996
BKCO1_800058
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
  
 0.996
BKCO1_2000155
40s ribosomal protein s14; Belongs to the universal ribosomal protein uS11 family.
  
 0.996
BKCO1_200042
60s ribosomal protein l7.
  
 0.996
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.