STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPS140S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (255 aa)    
Predicted Functional Partners:
BKCO1_7200013
40s ribosomal protein s17.
   
 0.999
BKCO1_7100034
40s ribosomal protein s13; Belongs to the universal ribosomal protein uS15 family.
  
 0.999
BKCO1_35000117
40s ribosomal protein s15; Belongs to the universal ribosomal protein uS19 family.
   
 0.999
BKCO1_2100028
40s ribosomal protein s20.
   
 0.999
BKCO1_2000063
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 0.999
BKCO1_14000119
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
 0.999
BKCO1_1200051
40s ribosomal protein s3; Belongs to the universal ribosomal protein uS3 family.
   
 0.999
BKCO1_1200042
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
 0.999
BKCO1_6500030
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.999
BKCO1_1000256
60s ribosomal protein l8.
   
 0.999
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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