STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_200091Rnapii degradation factor def1 protein. (1008 aa)    
Predicted Functional Partners:
BKCO1_11000135
Uncharacterized protein.
    
 0.847
BKCO1_7000107
Wd repeat protein.
   
 0.548
BKCO1_18000106
Pre-rrna-processing protein ipi1.
    
 0.536
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
  0.518
BKCO1_2000155
40s ribosomal protein s14; Belongs to the universal ribosomal protein uS11 family.
   
  0.489
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
  0.466
BKCO1_5000170
Rna processing protein.
    
  0.464
BKCO1_600074
Nuclear gtp-binding protein nug1.
   
  0.464
BKCO1_8000132
Wsc domain containing protein.
    
 0.463
BKCO1_2000057
Calmodulin; Belongs to the calmodulin family.
   
  0.455
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.