STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_1000104Xylosidase: arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family. (575 aa)    
Predicted Functional Partners:
BKCO1_920006
Nad binding rossmann fold oxidoreductase.
    
  0.761
BKCO1_1000190
Extracellular exo; Belongs to the glycosyl hydrolase 28 family.
   
 
  0.681
BKCO1_30000101
Small monomeric gtpase.
   
 0.678
BKCO1_600010
Traf-type zinc finger protein.
    
 0.670
BKCO1_6500028
Gtr1 g domain containing protein.
    
 0.640
BKCO1_1000048
Proline-rich transmembrane protein 2 isoform x1.
    
  0.589
BKCO1_1000047
Uncharacterized protein.
    
  0.589
BKCO1_300016
Glycogen synthase kinase; Belongs to the protein kinase superfamily.
    
 0.584
BKCO1_2200044
V-type proton ATPase subunit; Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. The active enzyme consists of a catalytic V1 domain attached to an integral membrane V0 proton pore complex. This subunit is a non-integral membrane component of the membrane pore domain and is required for proper assembly of the V0 sector. Might be involved in the regulated assembly of V1 subunits onto the membrane sector or alternatively may prevent the passage of protons through V0 pores; Belongs to the V-ATPase V0D/AC39 subunit family.
    
 0.583
BKCO1_1600057
Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.
    
  0.562
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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