STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_100015Trimeric-like protein. (237 aa)    
Predicted Functional Partners:
BKCO1_1200045
Dynactin arp1 p62 subunit ro2.
    
 0.995
BKCO1_2400019
Dynactin subunit 5 protein.
   
 0.993
BKCO1_20000146
Actin-related protein ro7; Belongs to the actin family.
   
 0.992
BKCO1_860009
Dynactin subunit.
    
 0.991
BKCO1_1070009
F-actin capping protein beta subunit; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
 0.977
BKCO1_20000104
Actin-like protein; Belongs to the actin family.
    
 0.947
BKCO1_1100044
Actin.
    
 0.947
BKCO1_490003
Dynein light intermediate chain.
    
 0.935
BKCO1_5400071
Cytoplasmic dynein 1 intermediate chain 2.
    
 0.921
BKCO1_2000020
Dynein heavy chain.
    
 0.883
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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