STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BKCO1_2000182Cmgc srpk protein kinase. (631 aa)    
Predicted Functional Partners:
BKCO1_2000231
Pre-mrna splicing factor.
    
 0.962
BKCO1_400013
Pre-mrna-splicing factor cef1.
    
   0.889
BKCO1_3500044
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.794
BKCO1_3700066
Pre-mrna splicing factor.
    
 0.662
BKCO1_2200085
Rna splicing factor.
    
 
 0.650
BKCO1_8100015
U1 small nuclear ribonucleoprotein.
    
 0.624
BKCO1_22000105
Protein kinase.
    
 
0.562
BKCO1_6700059
R3h domain.
    
 0.507
BKCO1_6800040
Rna recognition motif containing protein.
    
 0.507
BKCO1_3300018
Glycoside hydrolase family 16 protein.
    
 
 0.489
Your Current Organism:
Diplodia corticola
NCBI taxonomy Id: 236234
Other names: Botryosphaeria corticola, Botryosphaeria corticola A.J.L.Phillips, A.Alves & J. Luque 2004, CBS 112549, D. corticola, Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.