STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IX39_02405Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)    
Predicted Functional Partners:
IX39_02410
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.937
IX39_02400
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.934
IX39_02395
Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.764
IX39_15665
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.647
IX39_10425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.625
IX39_08520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.622
IX39_15715
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.591
sbcD
DNA repair exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
     0.506
IX39_08665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.483
IX39_14025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.482
Your Current Organism:
Chryseobacterium formosense
NCBI taxonomy Id: 236814
Other names: C. formosense, CCUG 49271, CIP 108367, Chryseobacterium formosense Young et al. 2005 emend. Hahnke et al. 2016, Chryseobacterium sp. CC-H3-2, DSM 17452, strain CC-H3-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.