STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IX39_02455Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (651 aa)    
Predicted Functional Partners:
IX39_02450
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.932
kduI
5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
   
    0.646
IX39_15580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.522
IX39_02445
Cysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.517
IX39_15385
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.501
IX39_15795
LemA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.464
IX39_02440
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.436
IX39_03150
Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family.
  
    0.432
Your Current Organism:
Chryseobacterium formosense
NCBI taxonomy Id: 236814
Other names: C. formosense, CCUG 49271, CIP 108367, Chryseobacterium formosense Young et al. 2005 emend. Hahnke et al. 2016, Chryseobacterium sp. CC-H3-2, DSM 17452, strain CC-H3-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.