STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IX39_03380Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family. (533 aa)    
Predicted Functional Partners:
IX39_05670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.669
IX39_11455
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.660
IX39_06275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.654
IX39_17595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.650
IX39_10000
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.641
IX39_01955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.617
IX39_05795
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.615
IX39_12920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
0.605
IX39_17880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.594
IX39_17495
Gliding motility protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.591
Your Current Organism:
Chryseobacterium formosense
NCBI taxonomy Id: 236814
Other names: C. formosense, CCUG 49271, CIP 108367, Chryseobacterium formosense Young et al. 2005 emend. Hahnke et al. 2016, Chryseobacterium sp. CC-H3-2, DSM 17452, strain CC-H3-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.