Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IX39_03475Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)    
Predicted Functional Partners:
IX39_00265
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.964
IX39_10780
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.955
IX39_04065
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.953
IX39_00890
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.950
IX39_17740
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.934
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.916
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
 
 0.877
IX39_09180
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.862
IX39_18785
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.851
IX39_20375
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.849
Your Current Organism:
Chryseobacterium formosense
NCBI taxonomy Id: 236814
Other names: C. formosense, CCUG 49271, CIP 108367, Chryseobacterium formosense Young et al. 2005 emend. Hahnke et al. 2016, Chryseobacterium sp. CC-H3-2, DSM 17452, strain CC-H3-2
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