STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IX39_04575Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)    
Predicted Functional Partners:
IX39_00265
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.999
IX39_04570
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.984
IX39_02865
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.975
IX39_18630
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.959
IX39_04065
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.927
IX39_07740
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.901
IX39_08135
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.896
IX39_12975
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.875
IX39_05745
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.811
IX39_15630
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.749
Your Current Organism:
Chryseobacterium formosense
NCBI taxonomy Id: 236814
Other names: C. formosense, CCUG 49271, CIP 108367, Chryseobacterium formosense Young et al. 2005 emend. Hahnke et al. 2016, Chryseobacterium sp. CC-H3-2, DSM 17452, strain CC-H3-2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.