Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
IX39_09005Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)    
Predicted Functional Partners:
recF
DNA recombination protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
       0.781
IX39_02110
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
IX39_16470
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.737
IX39_15500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.669
IX39_14835
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.662
IX39_07265
Barnase inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.661
IX39_06545
Beta-carotene 15,15'-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.656
IX39_02145
Surface antigen family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.642
IX39_01320
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
IX39_13325
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.629
Your Current Organism:
Chryseobacterium formosense
NCBI taxonomy Id: 236814
Other names: C. formosense, CCUG 49271, CIP 108367, Chryseobacterium formosense Young et al. 2005 emend. Hahnke et al. 2016, Chryseobacterium sp. CC-H3-2, DSM 17452, strain CC-H3-2
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