STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IX39_14900ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa)    
Predicted Functional Partners:
IX39_19005
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.898
IX39_14905
Photosynthetic protein synthase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.856
IX39_11495
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.795
IX39_18845
phenylacetate-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.795
IX39_14895
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.727
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.705
IX39_00265
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.659
IX39_13515
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.512
IX39_14910
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
       0.509
IX39_10165
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.459
Your Current Organism:
Chryseobacterium formosense
NCBI taxonomy Id: 236814
Other names: C. formosense, CCUG 49271, CIP 108367, Chryseobacterium formosense Young et al. 2005 emend. Hahnke et al. 2016, Chryseobacterium sp. CC-H3-2, DSM 17452, strain CC-H3-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.