Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
IX39_19775LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)    
Predicted Functional Partners:
IX39_00265
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.980
IX39_02865
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.968
IX39_04065
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.954
IX39_08135
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.818
IX39_07740
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.701
IX39_20660
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.616
IX39_02560
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.505
IX39_10705
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.496
IX39_15680
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.492
IX39_12800
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.488
Your Current Organism:
Chryseobacterium formosense
NCBI taxonomy Id: 236814
Other names: C. formosense, CCUG 49271, CIP 108367, Chryseobacterium formosense Young et al. 2005 emend. Hahnke et al. 2016, Chryseobacterium sp. CC-H3-2, DSM 17452, strain CC-H3-2
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