STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA74424.1Hypothetical protein. (412 aa)    
Predicted Functional Partners:
SFA74397.1
TonB-dependent receptor.
 
     0.903
SFB45718.1
Tetratricopeptide repeat-containing protein.
  
 
 0.826
SFB56147.1
Beta-barrel assembly machine subunit BamD.
   
 
 0.812
SFA85943.1
Outer membrane protein assembly factor BamA.
   
 
 0.643
SFA92444.1
Beta-barrel assembly machine subunit BamA.
   
 
 0.643
SFB09991.1
Calcineurin-like phosphoesterase.
   
 
 0.643
SFB17925.1
Surface antigen.
   
 
 0.643
SFB27286.1
Hypothetical protein.
   
 
 0.643
SFB31287.1
Outer membrane protein assembly factor BamA.
   
 
 0.643
SFB31389.1
Surface antigen.
   
 
 0.643
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.