STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA80185.1Transglutaminase-like superfamily protein. (620 aa)    
Predicted Functional Partners:
SFA80203.1
Protein of unknown function.
 
     0.948
SFA80222.1
Protein of unknown function.
 
     0.899
SFA80244.1
Hypothetical protein.
 
     0.899
SFB44355.1
Hypothetical protein.
  
     0.681
SFB58092.1
Hypothetical protein.
  
     0.654
SFB10822.1
Protein of unknown function.
  
     0.627
SFB09991.1
Calcineurin-like phosphoesterase.
  
     0.596
SFB09960.1
HD domain-containing protein.
  
     0.542
SFA80163.1
Acyl dehydratase.
       0.501
SFB10007.1
GAF domain-containing protein.
  
     0.501
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.