STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA85903.13',5'-cyclic AMP phosphodiesterase CpdA. (454 aa)    
Predicted Functional Partners:
SFB27329.1
Alkaline phosphatase; Belongs to the alkaline phosphatase family.
 
 
 0.603
SFB10670.1
Starch-binding associating with outer membrane.
  
     0.562
SFB10716.1
PhoPQ-activated pathogenicity-related protein.
 
     0.544
SFB10647.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.513
SFA85922.1
Family of unknown function.
       0.456
SFA85943.1
Outer membrane protein assembly factor BamA.
       0.456
SFB20026.1
Protein of unknown function.
  
     0.454
folE
GTP cyclohydrolase I.
    
 0.439
SFB27149.1
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.426
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.