Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFA88151.1 | SFB48155.1 | SAMN04489723_102146 | SAMN04489723_112115 | Dihydroorotase. | Carbamoyl-phosphate synthase large subunit. | 0.985 |
SFA88151.1 | SFB61607.1 | SAMN04489723_102146 | SAMN04489723_1369 | Dihydroorotase. | Dihydroorotase. | 0.723 |
SFA88151.1 | carA | SAMN04489723_102146 | SAMN04489723_10245 | Dihydroorotase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.983 |
SFA88151.1 | purL | SAMN04489723_102146 | SAMN04489723_11838 | Dihydroorotase. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.526 |
SFA88151.1 | pyrB | SAMN04489723_102146 | SAMN04489723_12619 | Dihydroorotase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
SFA88151.1 | pyrD | SAMN04489723_102146 | SAMN04489723_102167 | Dihydroorotase. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.958 |
SFA88151.1 | pyrE | SAMN04489723_102146 | SAMN04489723_107216 | Dihydroorotase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.885 |
SFA88151.1 | pyrF | SAMN04489723_102146 | SAMN04489723_10152 | Dihydroorotase. | Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.784 |
SFB25566.1 | SFB48155.1 | SAMN04489723_106130 | SAMN04489723_112115 | Amidophosphoribosyltransferase. | Carbamoyl-phosphate synthase large subunit. | 0.959 |
SFB25566.1 | carA | SAMN04489723_106130 | SAMN04489723_10245 | Amidophosphoribosyltransferase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.929 |
SFB25566.1 | purH | SAMN04489723_106130 | SAMN04489723_106180 | Amidophosphoribosyltransferase. | Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase. | 0.979 |
SFB25566.1 | purL | SAMN04489723_106130 | SAMN04489723_11838 | Amidophosphoribosyltransferase. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.999 |
SFB25566.1 | pyrB | SAMN04489723_106130 | SAMN04489723_12619 | Amidophosphoribosyltransferase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.778 |
SFB25566.1 | pyrD | SAMN04489723_106130 | SAMN04489723_102167 | Amidophosphoribosyltransferase. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.527 |
SFB25566.1 | pyrE | SAMN04489723_106130 | SAMN04489723_107216 | Amidophosphoribosyltransferase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.562 |
SFB25566.1 | pyrF | SAMN04489723_106130 | SAMN04489723_10152 | Amidophosphoribosyltransferase. | Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.600 |
SFB48155.1 | SFA88151.1 | SAMN04489723_112115 | SAMN04489723_102146 | Carbamoyl-phosphate synthase large subunit. | Dihydroorotase. | 0.985 |
SFB48155.1 | SFB25566.1 | SAMN04489723_112115 | SAMN04489723_106130 | Carbamoyl-phosphate synthase large subunit. | Amidophosphoribosyltransferase. | 0.959 |
SFB48155.1 | SFB61607.1 | SAMN04489723_112115 | SAMN04489723_1369 | Carbamoyl-phosphate synthase large subunit. | Dihydroorotase. | 0.892 |
SFB48155.1 | carA | SAMN04489723_112115 | SAMN04489723_10245 | Carbamoyl-phosphate synthase large subunit. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.999 |
page 1 of 6